1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atcaaaatttaccgaaagcttcaggattgtgtgactatttcgactttagctgagattcatgacaaaaagctaattcttagcttacacatcatgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
species | Glycine max |
transcript | GLYMA15G16830.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAG ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAEST: gi|22928680|gb|BU545819.1|BU545819
genomic: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGgtaaatttgg ... atgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
EST: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAG ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAEST: gi|21675734|gb|BQ628085.1|BQ628085
genomic: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGgtaaatttgg ... atgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
EST: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAG ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAEST: gi|17401109|gb|BM177891.1|BM177891
genomic: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGgtaaatttgg ... atgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
EST: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAG ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAEST: gi|6916170|gb|AW397700.1|AW397700
genomic: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGgtaaatttgg ... atgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
EST: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAG ATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAGTATAG
genomic: GATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGgtaaatttgg ... atgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAGTATAG
ttagctgagattcatgacaaaaagctaattcttagcttacacatcatgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
agcttac putative branch site (score: 3)
taattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaaaatttaccgaaagcttcaggattgtgtgactatttcgactttagctgagattcatgacaaaaagctaattcttagcttacacatcatgattgcagATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - -gcttcag
- - - - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacac