1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttgcaagaaaatcatgcatattaagttgcaaaactttctgcacatcatgatagatgctgattttcattggattatttactctcaatccgaatgaatagGCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTCCATTGAGGCTCATCCTAGCAAAGCAGTTCAAGCTGTATTGAAGTCCTTTT
species | Glycine max |
transcript | GLYMA15G12780.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGAAAATGTTGCTAAAGTTAAGGCCCTGTATAATGAGCTTAATCTTCAG GCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTTCEST: gi|11688057|gb|BF595733.1|BF595733
genomic: CAGAAAATGTTGCTAAAGTTAAGGCCCTGTATAATGAGCTTAATCTTCAGgtttgaactt ... gaatgaatagGCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTCC
EST: CAGAAAATGTTGCTAAAGTTAAGGCCCTGTATAATGAGCTTAATCTTCAG GCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTCC
genomic: CAGAAAATGTTGCTAAAGTTAAGGCCCTGTATAATGAGCTTAATCTTCAGgtttgaactt ... gaatgaatagGCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTCC
atcatgatagatgctgattttcattggattatttactctcaatccgaatgaatagGCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTCCATTGAGGCTCATCCTAGCAAAGCAGTTCAAGCTGTATTGAAGTCCTTTT
tgctgat putative branch site (score: 3)
attatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcaagaaaatcatgcatattaagttgcaaaactttctgcacatcatgatagatgctgattttcattggattatttactctcaatccgaatgaatagGCTGTATTTGAGGAGTATGAGAACGGGAGCTATGCAAAGCTTGTTTCCTCCATTGAGGCTCATCCTAGCAAAGCAGTTCAAGCTGTATTGAAGTCCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- -tgcaaga
- - - - - - -tcatgca
- - - - - - - - - - - - -agttgca
- - - - - - - - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - cacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat