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...tccatcgtataattgcttgcccttgcctattagagaaagttatactttgaaacagttatacataatacaaaaaaatcacacttgttctgcctctttgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTCGGAACTGGGACAGTTAGTGGTCCT
species | Glycine max |
transcript | GLYMA15G12100.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCGGGGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTT ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAAEST: gi|5676815|gb|AI937945.1|AI937945
genomic: GCGGGGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctttgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: GCGGNGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTT ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAAEST: gi|58015544|gb|CX702286.1|CX702286
genomic: GCGGGGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctttgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: GCGGGGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTT ATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAAEST: gi|151402383|gb|EV272196.1|EV272196
genomic: GCGGGGCATGAAGATTCAGGTGTGGTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctttgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAA
EST: GTGTCACGGACTAATCTAAAGCACTT ATATTGGACATTCGACCCAACAACTTGCTCACCATACAATCAACGGTTGCA
genomic: GTGTCACGGACTAATCTAAAGCACTTgtaaggaatt ... ctctttgtagATATTGGACATT-GACCCAACAACTTGCTCACCATACAATCAACGGTTGCA
tttgaaacagttatacataatacaaaaaaatcacacttgttctgcctctttgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTCGGAACTGGGACAGTTAGTGGTCCT
cttgttctgcctcttt CT-rich tract
agttatacataataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatcgtataattgcttgcccttgcctattagagaaagttatactttgaaacagttatacataatacaaaaaaatcacacttgttctgcctctttgtagATATTGGACATTGACCCAACAACTTGCTCACCATACAATCAACGGTTGCAACCTTAGGCCAGGCGATCTCCTCGGAACTGGGACAGTTAGTGGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - -cttgccc
- - - - - - - - - - - ttgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa