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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgcttgtcttgaactatttattaatctcacatgttgtttaattgtcatttgtcacacgatccatgtgaccattttaagcaaaaccttgttcaatgaaaattctctgcttctaaacgattgataatttactttgcatttttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG

Basic information

species Glycine max
transcript GLYMA15G07480.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07480.2 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 11
gtaagtatgcttgtcttgaactatttattaatctcacatgttgtttaattgtcatttgtcacacgatccatgtgaccatttta---agcaaaaccttgttcaatgaaaattctctgcttctaaacgattgataatttactttgcatttttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG
|||||| ||| |  | | |    |  ||       |  | | |||  ||   || || |      ||  |  | | ||  |||     || |  | |    ||  ||   | |||| |  |   || |  |  | ||  | |   ||||   || |||| |||||||||||||||||||||||||||||| | ||| ||||| |||| ||||||||||| |||
gtaagtgtgcatcgcattattgttagatgctaagtaactatggttagatatgcagtttttgattcatgaagataatcaacttacctttcagatgcctaccgaaaaaactctttctgatcttgt-cggtcaagtaattggtgtaatttttctttgcagATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAG

upper sequence: GLYMA15G07480.2 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G041181_T01 (Zea mays), 3'ss of exon 11
---------------------------------------gtaagtatgcttgtcttgaactatttattaatct-cacatgt-tgtttaattgt-catttgtcacacgatccatgtgaccattttaagcaaaaccttgttc--aatgaaaattctctgcttctaaacgattgataatttactttgcatttttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG
                                        ||  |||   | | |  |  ||| |||  || |  | || | | | ||  | |  || | |   |  ||     | |  | |        | ||||| |   ||  | |||||| || ||||    |     || |   |    |  || | ||| |||| ||||||||||||||||||||| |||||||  | ||| ||||| | || |||||||| || |||
gtaagctgatcacctttttgtttgctaaatcagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctttgaaaattttgataaataatcatctagtatccttgatgcgaaacataattctatggttcttttggtaacctagtaatccacacgcttgttctgcagATATTCTACTTTGTTGGATTTGGACTGTTCTGTCTGGAATCATTGCTTAGCATCTGGGTCATCCAG

upper sequence: GLYMA15G07480.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 3'ss of exon 11
gtaagtatgcttgtcttgaactatttattaatctcacatgttgtttaattgtcatttgtcacacgatccatgtgaccattttaagcaaaaccttgttcaatgaaaattctctgcttctaaacgattgataatttactttgcatttttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG
                                   | |  | | | | |||  |  |  ||   ||| ||  |||   | |  || | |       ||  || ||    | | ||       |||||||   || |||     ||||  | ||||| ||||||||  |||| |||||| |||||||  ||||| || || |||| |||||||||||||||
-----------------------------------aaacctaggtgacttg--accttgcatgagatacacatgagggtctctagaata-------tcgctggaagccttttactg------gattgattgatttcttc----ttttattatagATCTTCTACTTCATTGGGTTTGGAATGTTCTGTGTTGAATCAGTGCTCAGCATCTGGGTTATTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994675|gb|BQ786203.1|BQ786203
EST:     AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA                         ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGG
genomic: AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAgtaagtatgc ... tttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
EST: gi|10255229|gb|BE822995.1|BE822995
EST:     AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA                         ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
genomic: AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAgtaagtatgc ... tttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
EST: gi|6846844|gb|AW349134.1|AW349134
EST:     AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA                         ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
genomic: AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAgtaagtatgc ... tttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
EST: gi|4284462|gb|AI440784.1|AI440784
EST:     AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA                         ATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
genomic: AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAgtaagtatgc ... tttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT
EST: gi|16343904|gb|BI969499.1|BI969499
EST:     AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGA                         ATTTTCTACTTTGTTGGATTTGGATTGTTGTGCATTGAAACATTGATCAGT
genomic: AGGCATTCTGTCAGCCATAGATGTGGTGGGTGACCATGCAGTGATTGGAgtaagtatgc ... tttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaaattctctgcttctaaacgattgataatttactttgcatttttcctgtagATTTTCTACTTTGTTGGATTTGGATTGTTCTGCATTGAAACATTGATCAGTATCTGGGTTATTCAG
                                    ctttgcatttttcct  CT-rich tract
                        attgataatttacttt  TA-rich tract