Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgacttcttaggccacatacattttaatttttttaaaaaacttcatatggatttaattggtatgcattgttgcttaaatattttttacattgtcaactgatcataaaatttcatatggtttaaaaaaatgagtcttaactctttctatatatatcaaatctaactaattaattattctgtttcagTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATGGAACTTGAAAAGTTACATGATTCAATCAATTTGATACTGTCACTTCAG

Basic information

species Glycine max
transcript GLYMA15G07110.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193490022|gb|FK453677.1|FK453677
EST:     ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAG                         TGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
genomic: ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAGgcaagtgact ... tctgtttcagTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
EST: gi|192304630|gb|FG998716.1|FG998716
EST:     ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAG                         TGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
genomic: ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAGgcaagtgact ... tctgtttcagTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
EST: gi|192306249|gb|FG995071.1|FG995071
EST:     ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAG                         TGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
genomic: ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAGgcaagtgact ... tctgtttcagTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
EST: gi|8670117|gb|BE191224.1|BE191224
EST:     ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAG                         TGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG
genomic: ATAGAGATCATGCATGGCAAGTTTCTGATACCACTGCAGAATGTTTGAAGgcaagtgact ... tctgtttcagTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcttaactctttctatatatatcaaatctaactaattaattattctgtttcagTGTTGTCTACTTTTATCAGTGCTGCCACAAGATATTGTGGGAGAAAAAATGGAACTTGAAAAGTTACATGATTCAATCAATTTGATACTGTCACTTCAG
                                            ttctgtttc  CT-rich tract
         tctttctatatatatc  TA-rich tract