1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagatgttctttattttgctttataatttcattgcccttatcttttgtgttttattgaggtcaagtctttttgtgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG
species | Glycine max |
transcript | GLYMA15G04780.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCAC CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACEST: gi|213595685|gb|DB977967.1|DB977967
genomic: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCACgtgagatgtt ... tgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTAC
EST: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCAC CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACEST: gi|22928907|gb|BU546046.1|BU546046
genomic: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCACgtgagatgtt ... tgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTAC
EST: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCAC CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACEST: gi|120529441|gb|EH257575.1|EH257575
genomic: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCACgtgagatgtt ... tgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTAC
EST: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCAC CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACEST: gi|6483197|gb|AW202379.1|AW202379
genomic: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCACgtgagatgtt ... tgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTAC
EST: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCAC CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTAC
genomic: AGTTCAGTGTGTTACAATGTTATTATGTTAAACAGCCTCCTGCTCTTCACgtgagatgtt ... tgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTAC
tcattgcccttatcttttgtgttttattgaggtcaagtctttttgtgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG
tctttttgt CT-rich tract
ttttgtgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgttctttattttgctttataatttcattgcccttatcttttgtgttttattgaggtcaagtctttttgtgttatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA