1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtattttcttccattttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTA
species | Glycine max |
transcript | GLYMA15G03930.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTCATTTTGTCATCCGCTEST: gi|120494990|gb|EH223157.1|EH223157
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
EST: TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCTEST: gi|120495098|gb|EH223265.1|EH223265
genomic: TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
EST: TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
genomic: TGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCT
atattcagccttctgcactaaatattaaggactacttcattatggtaactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTA
tggtaac putative branch site (score: 2)
ctctc CT-rich tract
actaaatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattttcttccattttttaatgttacatggtattatgataaatggcatattcagccttctgcactaaatattaaggactacttcattatggtaactctcagGTTGTGGTTGCAATTCTTAGCATCATTTGTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG