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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataatgcatttttcaattattttttcagtattatgatctcccagttttctgaagtaatttaaaatagttggaaaacaagaatccatatgattataacaatttgatgcctttgtgcattgcaaaaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA

Basic information

species Glycine max
transcript GLYMA15G03900.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 3'ss of exon 9
gtaagataatgcatttttcaattattttttcagtattatgatctcccagttttctgaagtaatttaaaatagttggaaaacaagaatccatatgattataaca-atttgatgcctttgtgcattgcaaaaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                                                                                 |   || | | || || |   |  | ||||        || ||  ||  |||  ||      ||||   ||  |||| ||||| || || ||||||||||| || |||||| | |||||||| ||||| || ||||| || ||  | || || ||||||||||||||||||| |||
-------------------------------------------------------------------------------gtacctatacttttgtttgttttacgtgtgattttagatggccttttaattactctttggctgttactg--aacgcagGTATAGCGAACACAATGGATCTTCCTGAAAAGTTATTGCCTCGTATTTCAAGTCGGATGGGTATCCAACGACTGTGTTTTGGCCCATATAATTATCGGCA

upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G168249_T01 (Zea mays), 3'ss of exon 9
gtaagataatgcatttttcaattattttttcagtattatgatctcccagttttctgaagtaatttaaaatagttggaaaacaagaatccatatgattataacaatttga---tgcctttgtgcattgcaaaaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                                                                                   | | | | |  ||| |  || ||||    | || ||     || |  |  | |  |||    | | ||   | |||| |||||||| || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||  | || || ||||| ||||| ||||||   ||
-----------------------------------------------------------------------------------gtaactaaactattcttccattttgtccttacccttaccttttactcaccccttgtctgttttgccatggttgcagGTATAGCAAACACAATGGATCTTCCAGAAAAGTTATTGCCTCGTATATCAAGTCGGATGGGTATCCAACGACTGTGTTTTGGTCCATACAATTATAGACA

upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G455243_T01 (Zea mays), 3'ss of exon 9
gtaagataatgcatttttcaattattttttcagtattatgatctcccagttttctgaagtaatttaaaatagttggaaaacaagaatccatatgattataacaatttgatgcctttgtgcattgcaaaaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
                                                                           | ||  ||  || | | | ||| |   ||  | | | |||      ||   |   ||| || ||  |  |||| |    ||| |||||||| || |||||||||||||| || ||| | |||||||||||||| || |||||||| ||  | || || ||||| ||||| ||||||| |||
---------------------------------------------------------------------------gtaactaactattctttttatttt--taacctta-gtcttacctttttcttaccccttgtttttttg-gctatgatcatagGTATAGCAAACACAATGGATCTTCCAGAAAAATTATTGCCTCGTATATCAAGTCGGATGGGCATTCAACGACTGTGTTTTGGTCCATACAATTATCGGCA

upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 3'ss of exon 9
gtaagataatgcatttttcaa------ttattttttc-----agtattatgatctccca-----gttttctgaagtaatttaaaatagttggaaaacaagaatccatatgattataacaatttgatgcctttgt-gcattgcaa--aaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
||| ||   |   ||||| ||      |||| || ||     |  | |||   |    |     |||| ||    ||   |||  || |  ||     | |    |||  |||   ||||    | ||  |||| | | | |||  | | |  |   | |  | | | |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| || || |||||||| ||||| || ||||||||||| ||
gtaggacttttatttttttaacaaggtttatcttctcttgtgacaaatatagccatgtaatgttgtttccttttatagaataaggtattgtgagtggcacaggtgata-aattgctacaaca-aaagcagttgtagtaatacaattataatgctgtgttataaatctaaattcagGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACA

upper sequence: GLYMA15G03900.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 3'ss of exon 10
gtaagataatgcatttttcaa-----ttattttttc-----agtattatgatctccca-----gttttctgaagtaatttaaaatagttggaaaacaagaatccatatgattataacaatttgatgcctttgt-gcattgcaa--aaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
||| ||   |   ||||| |      |||| || ||     |  | |||   |    |     |||| ||  | ||   |||  || |  ||     | |    |||  |||    |||    | ||  |||| | | | |||  | | |  |   | |  | | | |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| || || |||||||| ||||| || ||||||||||| ||
gtaggactttatttttttaacgaggtttatcttctcttgtgacaaatatagccatgtaatgttgtttcctttaatagaataaggtattgtgagtggcacaggtgata-aattgctgcaaca-aaagcagttgtagtaatacaattataatgctgtgttataaatctaaattcagGGATAGCAAATACCATGGATCTTCCAGAGAAGTTGCTTCCCCGTATTTCAAGCCGAATGGGTATTCAAAGGCTTTGTTTTGGGCCCTATAATTATCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttgatgcctttgtgcattgcaaaaacttattcttcagtactatcaattcagGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCA
  atttgat  putative branch site (score: 5)
                        aaaaacttattctt  TA-rich tract