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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgaaagttcaagactgactttttgaaaaagaaatatttttcactagctgattctggcattttatattagccacatatatctgagtttaccctttcttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAATGTAA

Basic information

species Glycine max
transcript GLYMA15G03190.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03190.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os02g27950.1 (Oryza sativa), 3'ss of exon 11
--gtgtgaaagttcaagactgact-ttttgaaaaagaaatatttttcactagctgattctggcattttatattagccacatatatctgagtttaccctttcttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCG---CCTGCTCGGCCTCC-CA--CTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAATGTAA
   | |   |    |   ||| ||  |||     |   |||||  |    | ||  | ||   ||  | | |    ||     |        |    |||||    |  ||||||||||||| ||||||||||| |||||||| | ||||||     |||   ||||||| ||  ||||||  ||||||||  | | ||| | | | | ||      
gtctatcgtatactacatctggctgcttttgtgcatggatattgataggcatctattcctctgatcatttgtgtcgcaaggtcactgacaactgttatttctaa--accagGAATTCAAGCTGAACCCTAATGCTAAGAGTTTCACTCCATCAACTTCTGTGAGGCCTCCACAACCTCCAGCATCTGATGGACCATACTACTATGCTAATA------

upper sequence: GLYMA15G03190.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g01560.t01 (Vitis vinifera), 3'ss of exon 11
gtgtgaaagttcaagactgactttttgaaaaagaaatatttttcactagctgattctggcattttatattagccacatatatctgagtttaccctttctt------gttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATC------GCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAATGTAA
          | |  | |  || |   | ||  |  |||  || |||  || ||  |    |||| |  ||  | ||| |   |   |||     || ||      | ||| |||||||||| || || || |||||||||||||| || |||||       ||||   |||| ||  | |||||||| |||||||| ||||||||||||||||      
---------cttataaatatctat---acaagcacctatcatttact--cttataatatacttttttgctaatctcatttccattgtttttttggtttttaacattgctatcagGAATTCAAACTCAATCCCAATGCAAAGAGTTTCATCCCATCTCAAACACCTGTAAGGCCGCCATCCCCAGTGTCAGATGGTTCATTCTATTTTCCAACTA------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633090|gb|DW246622.1|DW246622
EST:     CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG                         GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... ttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: gi|58016071|gb|CX702813.1|CX702813
EST:     CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG                         GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... ttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: gi|57574899|gb|CX547874.1|CX547874
EST:     CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG                         GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... ttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: gi|31561922|gb|CD487760.1|CD487760
EST:     CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG                         GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... ttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: gi|192295054|gb|FG986773.1|FG986773
EST:     CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG                         GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... ttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
EST: gi|51335818|gb|CO979684.1|CO979684
EST:     CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAG                         GAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG
genomic: CAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGgtgtgaaagt ... ttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctggcattttatattagccacatatatctgagtttaccctttcttgttataagGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAATGTAA
                                  tttaccctttcttgtt  CT-rich tract
       attttatatta  TA-rich tract