Sequence
atgc intronic sequence ATGC exonic sequencegtatttaatcaatcagaggcctttctattttttttttctcattcatcaatcacaatttaatttttttccccttaaatcctcctggtgctacttcaattcaagaagcatcacttaaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcagGAAGCCACTGGAGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCA
Basic information
species | Glycine max |
transcript | GLYMA15G02390.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 3'ss of exon 11
gtatttaatcaatcagaggcctttctattttttttttctcattcatcaatcacaatttaatttttttccccttaaatcctcctggtgctacttcaattcaagaagcatcact------taaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcagGAAGCCACTGGAGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCA
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gtaattctttca--agatgccatctgaaaccaaa------gtaaattaatggtagtgcaaagcagaaacaccagaaagaaac--actcgattctaaaccaaaaagcaccttcatgggatgaatcaaagcccttatgtttacagcagaagtgtgtcatgttattt-tctcagGAAGCCTTTGGAGCATTTCTTGAAGGCAGTAGATGAAATCACTTTGAAGGATATCACCACCATTGCCCAGAGGATCATTTCTTCACCTCTTACAATGGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33388638|gb|CA851845.1|CA851845EST: CTTATGGAGAAAG GAAGCCACTGGNAGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATG
genomic: CTTATGGAGAAAGgtatttaatc ... cccatttcagGAAGCCACTGG-AGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaaatcatggacctaaattgtaatttgagaatttgtgaggtgacccatttcagGAAGCCACTGGAGCAGTTCTTTAAGGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCA
acctaaa putative branch site (score: 3)
cccatttc putative PPT
taaattgtaatttgag TA-rich tract