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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacagGTACCTGTCCATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTTCTGGTGAATGTAGGGCT

Basic information

species Glycine max
transcript GLYMA15G00250.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaatgctcaaggta----ctcatttctaacta------tagtttgtttcatgaacaatttccaa---cagGTACCTGTCCATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTTCTGGTGAATGTAGGGCT
               | ||  ||   ||  | ||||| |  |  |    |||  ||||||  ||   || | |   |  ||     | ||| ||  |||        | ||| |      | ||||| | |   ||||||  | || ||||||||||||||| ||||||| ||||||||||| || || || || || || || ||||||||||||||| |||||||||||| | ||
--------------gtgagagtagttatcgttagaaaatagaagt-ttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaacagGTACCTGTCCATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTTCTGGTGAATGTAGGGCT
                 ttctaac  putative branch site (score: 1)
                                             tttcc  putative PPT
               atttctaa  TA-rich tract