1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatggtttaatagttatgagtttcatctgttggaatccctatttttttatgggctaaggttgaccaaaacacgtgtaattgtgtttgctttgttataccatttcaaaatgtaaggtgtttcttgaattctgttcattgactttgtacttccatcttaaatattgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCAC
species | Glycine max |
transcript | GLYMA14G40320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|15661681|gb|BI699052.1|BI699052
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|192301679|gb|FG997621.1|FG997621
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|193358348|gb|FK324064.1|FK324064
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|192313365|gb|FK005137.1|FK005137
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|193311042|gb|FK275050.1|FK275050
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG A---TGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|192313364|gb|FK005136.1|FK005136
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|193630999|gb|FK579526.1|FK579526
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|208126857|gb|GD926087.1|GD926087
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|23059035|gb|BU578351.1|BU578351
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|7233546|gb|AW568951.1|AW568951
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTEST: gi|213592217|gb|DB965980.1|DB965980
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTEST: gi|208176347|gb|GD979030.1|GD979030
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTT
EST: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAG AAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
genomic: CAGGATTGCTGATGAGGATCCTGACGAGTCAACTGACAAAGAAAAGAAAGgtatggttta ... tgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCT
tttcttgaattctgttcattgactttgtacttccatcttaaatattgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCAC
tattgat putative branch site (score: 3)
atcttaaatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtttaatagttatgagtttcatctgttggaatccctatttttttatgggctaaggttgaccaaaacacgtgtaattgtgtttgctttgttataccatttcaaaatgtaaggtgtttcttgaattctgttcattgactttgtacttccatcttaaatattgatgcacagAAGATGCATCCTCTGACAATGATGAGAAGAAAGGTCAATATTCTAAGTTCTGGAATGAGTTTGGTAAATCCATTAAACTTGGTATCATCGAGGATGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG