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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctgctacctatatttttttatatttcattgtttaattcattatgtctttttgttgcttaaaaggctggttgttatcttactatagGTTCATCAACAATTGGATCCGGCTAGTTACTATGCCCAGTTTTATCGCACAGGTGGTGATAGTGACGGTCGCCTTTCACCTTTTTCTTCTGCTGGGACTA

Basic information

species Glycine max
transcript GLYMA14G36880.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706957|gb|BW653173.1|BW653173
EST:     ACAATTCTGAGTCTCAAACACGTGATGCTTCTCGGCTTCCAAGTTTTATT                         GTTCATCAACAATTGGATCCGGCTAGTTACTATGCCCAGTTTTATCGCACA
genomic: ACAATTCTGAGTCTCAAACACGTGATGCTTCTCGGCTTCCAAGTTTTATTgtgagcctgc ... cttactatagGTTCATCAACAATTGGATCCGGCTAGTTACTATGCCCAGTTTTATCGCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaattcattatgtctttttgttgcttaaaaggctggttgttatcttactatagGTTCATCAACAATTGGATCCGGCTAGTTACTATGCCCAGTTTTATCGCACAGGTGGTGATAGTGACGGTCGCCTTTCACCTTTTTCTTCTGCTGGGACTA
                                           atcttac  putative branch site (score: 3)
                                         ttatctt  CT-rich tract
     ttcattat  TA-rich tract