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gtaaaactttagtttataatgaactttccccctcttttgcaaaaacttcatttgggttatcataatggtgagtgatgttcttatccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
species | Glycine max |
transcript | GLYMA14G36540.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|20498857|gb|BQ273787.1|BQ273787
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATEST: gi|19053203|gb|BM731870.1|BM731870
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAAT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|9439950|gb|BE440462.1|BE440462
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|37994649|gb|CF806308.1|CF806308
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|298169681|gb|HO021041.1|HO021041
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|17962851|gb|BM269607.1|BM269607
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|5606648|gb|AI900746.1|AI900746
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|254334369|gb|GR844154.1|GR844154
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|254335254|gb|GR846751.1|GR846751
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG -TCATTAATTTGCGGTCAATCCGGC-GCTTGATCGATCCACAATCAATGCTEST: gi|10845821|gb|BF068863.1|BF068863
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTEST: gi|9565969|gb|BE475478.1|BE475478
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCT
tgcaaaaacttcatttgggttatcataatggtgagtgatgttcttatccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
ttcttatcc CT-rich tract
ttatcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactttagtttataatgaactttccccctcttttgcaaaaacttcatttgggttatcataatggtgagtgatgttcttatccgcatagGTCATTAATTTGCGTTCAATCCGGCCGCTTGATCGATCCACAATCAATGCTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG