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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaaaattttgctaagagttatactgtttctgttttcaagttgggacttttctatcttttcctctgttaataatagttttgaaaaattgttttccagGATGAGTACTCCAAATGGCTGGTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTTCCGTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG

Basic information

species Glycine max
transcript GLYMA14G36070.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
-----------------------------------------------------------------------gttgaaaattttgctaagagttatactgtttct--------gttttcaagttgggacttttctatcttttcctctgttaat--aatagttttgaaaaa-ttgttttccagGATGAGTACTCCAAATGGCTGGTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTTCCGTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG
                                                                        || |   | |  ||     |    || | |||        | ||  |   | ||  ||     | |||| ||   || ||  | | || ||       || | |||||||||||||||||  ||||| | || ||||||||||| |||||||||||||||||||||||||| || ||||| ||||| || || ||||| || ||||| |
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggacttttctatcttttcctctgttaataatagttttgaaaaattgttttccagGATGAGTACTCCAAATGGCTGGTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTTCCGTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTG
                      tgttaat  putative branch site (score: 3)
                                            ttgttttcc  putative PPT
                      tgttaataatagtttt  TA-rich tract