1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctttattgcttatttcctataagctcatgtgataagttcacaacggattgattaatctgtttacctaaatgttaccttaatttgcattacccttttgcagGATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCATCAAGTCATGTTTGACATTCAGTCAAAACAAGATCTTCTTCAGTAAAAT
species | Glycine max |
transcript | GLYMA14G18380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTAGTAGCTATGGTAGCCCATACAATCAGAGCCAAGTTTCTCTTCAGCCG GATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCAEST: gi|26048886|gb|CA785339.1|CA785339
genomic: TTAGTAGCTATGGTAGCCCATACAATCAGAGCCAAGTTTCTCTTCAGCCGgtaaggttct ... ccttttgcagGATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCA
EST: TTAGTAGCTATGGTAGCCCATACAATCAGAGCCAAGTTTCTCTTCAGCCG GATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCAEST: gi|193663261|gb|FK604049.1|FK604049
genomic: TTAGTAGCTATGGTAGCCCATACAATCAGAGCCAAGTTTCTCTTCAGCCGgtaaggttct ... ccttttgcagGATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCA
EST: CAAGTTTCTCTTCAGCCG GATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCA
genomic: CAAGTTTCTCTTCAGCCGgtaaggttct ... ccttttgcagGATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCA
gattgattaatctgtttacctaaatgttaccttaatttgcattacccttttgcagGATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCATCAAGTCATGTTTGACATTCAGTCAAAACAAGATCTTCTTCAGTAAAAT
ttaccctttt CT-rich tract
taaatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttattgcttatttcctataagctcatgtgataagttcacaacggattgattaatctgtttacctaaatgttaccttaatttgcattacccttttgcagGATGGAGCCAGTTCTCCACTTCCCTATTCTGGGTAGAGCACAAGAAACGCATCAAGTCATGTTTGACATTCAGTCAAAACAAGATCTTCTTCAGTAAAAT
- - - tgcttat
- - - - - - - - - - - - tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattac