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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggctctttcaatagatggaaggaataataaattccttgcatgtagactcattgccattccattttggcagtgggatgataaggatcttgaattgcagGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTT

Basic information

species Glycine max
transcript GLYMA14G16040.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G16040.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 12
---------gtaagtggctctttcaatagatggaaggaataataaattc-cttgcatgtagactcattgccattccattttggcagtgggatgataaggatcttgaattgcagGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTT
         ||   |  ||  ||  |   |  ||||| ||  |  |||  || ||||| |  |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||||||                           
gtgagcaaagtcttttccttcttgtacttacagaagggattttttatttactcgcatgaattctcattggtattccattttggcagTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTGGAAGATGGTTCCCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATA---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298457|gb|FG989178.1|FG989178
EST:     TGTTTAGTGCTGATGGCTCTGGAACTCTGACATCACCTTCAAACCAATTG                         GCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAG
genomic: TGTTTAGTGCTGATGGCTCTGGAACTCTGACATCACCTTCAAACCAATTGgtaagtggct ... tgaattgcagGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagactcattgccattccattttggcagtgggatgataaggatcttgaattgcagGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTGGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTT
                                atgataa  TA-rich tract