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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaatcccagttcttatgttttgcagtggttgttttcttgcagttataatgttcaatataacttttctcattacctgtgcccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTACTCTTATGGGAACTCACACAATTTGTCTGAAAATCAGTATCAGTTGAA

Basic information

species Glycine max
transcript GLYMA14G14000.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5605744|gb|AI899808.1|AI899808
EST:     AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG                         ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
EST: gi|27424174|gb|CA935694.1|CA935694
EST:     AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG                         ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
EST: gi|208103300|gb|GD901178.1|GD901178
EST:     AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG                         ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
EST: gi|31476284|gb|CD418312.1|CD418312
EST:     AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAG                         ACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT
genomic: AGCAACTTACATAGATGACAGTCGGCTTTGCTGCAGTAGTATCAGACAAGgtgaaatccc ... ccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgcagttataatgttcaatataacttttctcattacctgtgcccattttcagACAAGGTATGCTCCTTGGCTTGATTGGAGGATCACAAGCACATTCTTCCCTACTCTTATGGGAACTCACACAATTTGTCTGAAAATCAGTATCAGTTGAA
                    atataac  putative branch site (score: 3)
                                            cccattttc  putative PPT
        ttataatgttcaatat  TA-rich tract