1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agtcgacctcacctagtgggataaggcttattgttgaaggttgtctgcattgccctttcgttccctgaatctgactttatggtattggtttctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
species | Glycine max |
transcript | GLYMA14G09800.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGA AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGGEST: gi|14991662|gb|BI317335.1|BI317335
genomic: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAgtgagttttc ... tctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
EST: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGA AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGGEST: gi|51336696|gb|CO980562.1|CO980562
genomic: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAgtgagttttc ... tctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
EST: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGA AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGGEST: gi|18039079|gb|BM307373.1|BM307373
genomic: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAgtgagttttc ... tctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
EST: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGA AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGGEST: gi|27424149|gb|CA935669.1|CA935669
genomic: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAgtgagttttc ... tctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
EST: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGA AGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
genomic: CAGATCTTCGACATGTGAAATCAACATTTGCTGCTACTCCATCTCATAGAgtgagttttc ... tctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
tgcattgccctttcgttccctgaatctgactttatggtattggtttctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
atctgac putative branch site (score: 3)
tttct putative PPT
actttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcgacctcacctagtgggataaggcttattgttgaaggttgtctgcattgccctttcgttccctgaatctgactttatggtattggtttctggtgcagAGGGAAGTGTGCCGTTTGATTCCATCTTCCTCTAGTGACCACAGAAGG
- - - cctcacc
- - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgactt