1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactatattccacctgaaacacgtgggtagactttccttccagtttttacattcctggtgtaattatttctgtttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCATATACTGTGTTTTATTTGGTATCGTGG
species | Glycine max |
transcript | GLYMA14G08690.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTG GGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCAEST: gi|10845512|gb|BF068621.1|BF068621
genomic: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatatt ... tttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
EST: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTG GGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCAEST: gi|16345404|gb|BI970999.1|BI970999
genomic: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatatt ... tttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
EST: AAGAGTAGTGCAAATATCATGTGGTNNNATGATCTTCTTCTCTATTNNNG GGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
genomic: AAGAGTAGTGCAAATATCATGTGGTTTTATGATCTTCTTCTCTATTTTTGgtactatatt ... tttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCA
tagactttccttccagtttttacattcctggtgtaattatttctgtttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCATATACTGTGTTTTATTTGGTATCGTGG
ttatttctgtttcttt CT-rich tract
taattatttctgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatattccacctgaaacacgtgggtagactttccttccagtttttacattcctggtgtaattatttctgtttctttcagGGAAATTTGGAGCCTTTTTTGCATCGATTCCCCTACCGATATTTGCTGCCATATACTGTGTTTTATTTGGTATCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC