Sequence
atgc intronic sequence ATGC exonic sequence...aaatatttaaattgattatattttttgtactttctaaaataaaatatatattatgtaatatgaatataattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
Basic information
species | Glycine max |
transcript | GLYMA14G05430.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 3'ss of exon 11
aaatatttaaattgattatatt--ttttgtactttctaaaataaaatatatattatgtaatatgaatataattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
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ctttttcccaattcagtaacttcattttgagacttctctattccaacttttgaattattattttcaagaaattaaaactcattccaa--ggggtgttcttagGTTCGCACCTTCAGAGGACACACTAATGAGAAGAACTTCGTGGGCCTCTCTGTAAACAGTGAATATATTTCTTGTGGCAGTGAAACAAACGACGTCTTCG
upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 11
lower sequence: EFJ28584 (Selaginella moellendorffii), 3'ss of exon 11
aaatatttaaattgattatattttttgtactttctaaaataaaatatatattatgtaatatgaatataattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
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-----------gtatgcatatctctacagctctttagctcgaag---gtttcctg----atcgatcaaatcaaacaccgtgctttgtc-----tatgcagATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAGTTAACAGCGAGTACATTGCGTGCGGTAGTGAAACGAACGAAGTCGTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22524553|gb|BU083364.1|BU083364EST: CATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTGCCA GTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACA
genomic: CATCAACAGATAGTACACTGCGATTATGGGATGTGAAGGAAAACTTACCAgtgagtaata ... atgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatattatgtaatatgaatataattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
ttatgtaatatgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatatttaaattgattatattttttgtactttctaaaataaaatatatattatgtaatatgaatataattttttctcattttcattcaaatgtgtacagGTTCGTACTTTCAAAGGCCATGCAAATGAGAAAAACTTTGTTGGCCTTACAGTAAGCAGTGAATACATTGCGTGTGGCAGTGAAACAAATGAAGTCTTTG
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