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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatcttttaactggcctttttctcatatccactgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatagaagaccaataacaccttttgacttattaagactgttcatgttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG

Basic information

species Glycine max
transcript GLYMA14G03200.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os05g29010.1 (Oryza sativa), 3'ss of exon 8
gttcatcttttaactggcctttttctcatatccactgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatagaagaccaataa--caccttttgact--tattaagactgttcatg--ttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG------------------------------------------
                                                              |  |  ||  |   |   || ||   | | |  || |   ||  ||  ||  || ||| |  ||||     |  |  ||  | | |||||||||| ||||||||||||||||| |||||||| || ||  |||| || || ||||                                          
-------------------------------------------------------------gtaaaagcaaaacgatcaacagca-catgtttgcagcaagtcataaattcattttctgattcctattcgacattctggtgcatatcagGTTTCTAAGCACATGAATCATTTGCTGAAAGCACCCTTTTGCATACACCCGAAGACAGGTTAGACCCAAGTATATTTCCTATTTTTTCATCTAATGAATG

upper sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os05g29010.2 (Oryza sativa), 3'ss of exon 11
gttcatcttttaactggcctttttctcatatccactgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatagaagaccaataa--caccttttgact--tattaagactgttcatg--ttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG
                                                              |  |  ||  |   |   || ||   | | |  || |   ||  ||  ||  || ||| |  ||||     |  |  ||  | | |||||||||| ||||||||||||||||| |||||||| || ||  |||| || || ||||
-------------------------------------------------------------gtaaaagcaaaacgatcaacagca-catgtttgcagcaagtcataaattcattttctgattcctattcgacattctggtgcatatcagGTTTCTAAGCACATGAATCATTTGCTGAAAGCACCCTTTTGCATACACCCGAAGACAG

upper sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 3'ss of exon 12
----gttcatcttttaactggcctttttctcatatccactgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatagaagaccaataacaccttttgacttattaagactgttcatgttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG
    ||||  || |   ||  |  |||||  | | ||| |||   || | ||| ||     ||| |     ||    || |     | |  |   ||  | |||     | ||   ||| |   |||     ||  |  | ||  ||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| |||||||
gtttgttctactctatgcta-caattttcataaacccattgt--gctattatggta--gatattccc----tcgccgtattagatcttatagcaactg-acaagttttgtgac-tgtttagttgtatggtttcttcttttattgcagGTTTCAAAACAAATGAACCATTTGCTTAAGGCACCCTTCTGCGTCCATCCAAAAACAG

upper sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 11
-------------gttcatcttttaactggcctttttctcatatccac---tgttatctttcatgctattaccatttctgcagtcattatactgcccatcaatgtctctatag---aagaccaata----acacct----tttg---acttattaagactg---------ttcatgttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG
              | |   | | |||     ||||  |   |          || || ||   |  || |     ||   ||||   | | ||   |  |   ||| |       |||  ||| |     || ||    ||||   ||| | | | ||||         ||  || || ||||||| ||||||||||| |||||||| || |||||||| ||||| || || |||||||
gtttgtacaatttctgcccttctcaacaaattttttcttaccacttgagtacattgtccttggggtaatcaatcggtccagagtccagacaatggatacaatattctttgggactcaagtacaacattctgcatctggattttgtgcactaactcacactgacctttctgtttgtgcttcagGTTTCAAAACACATGAACCATTTGCTAAAGGCACCATTTTGTGTGCACCCAAAAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctatagaagaccaataacaccttttgacttattaagactgttcatgttttagGTTTCTAAACACATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAG
                        ttttgacttattaa  TA-rich tract