Sequence
atgc intronic sequence ATGC exonic sequencegtaaaactttagtttgtaatgaacttcccctcttttttgcaaaagcatcatttgggttatgataatggtgagtgatgctcttatccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
Basic information
species | Glycine max |
transcript | GLYMA14G02380.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02380.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G097226_T01 (Zea mays), 3'ss of exon 11
------------------gtaaaactttagtttgtaatgaacttcc-cctcttttttgcaaaagcatcatttgggttatgataatggtgagtgatgctcttatccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
|| | ||||| |||| | | || || ||||| || | || ||| || || || | || | || | | | ||| ||| || || | || |||||| |||| |||||| | | | || ||| | |||||||||||||||||| | ||||||| |||||||||||||| || |
gtaattccttttgtagatgttatactttcagttgttcagtatagccatctagtttttccatatgc--catctgtagtaccttacttttggttcatatt--tgttgaca--gGTGATCAACCTTCGATCAATCAGACCACTTGATAGAGCTGCTATTAATGCATCTGTCAGGAAAACCAACCGATTGGTGACTGTTGAAGAAGGGTTCCCCC
upper sequence: GLYMA14G02380.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G128121_T01 (Zea mays), 3'ss of exon 5
------------------gtaaaactttagtttgtaatgaacttcccctcttttttgcaaaagcatcatttgggttatgataatggtgagtgatgctcttatccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
|| | | ||| |||| | | || |||| | ||| || | || | || | || | | | ||| ||| || || | || || ||| |||| |||||| | | | || ||| | ||||| |||||||||||| | ||||||| |||||||||||||| ||||
gtaattcattttgtagacgttatagtttcacttgttcagtatggccatctacttttctccatatgccatctgtagcaccttacttttggttcatatt--tgttgaca--gGTGATCAACCTTCGATCGATCAGACCACTTGATAGAGCTGCTATTAATGCATCTGTTAGGAAAACCAACCGATTGGTGACTGTTGAAGAAGGGTTCCCTC
upper sequence: GLYMA14G02380.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv17s0000g00690.t01 (Vitis vinifera), 3'ss of exon 11
------------------gtaaaactttagtttgtaatgaactt---cccct-----cttt-----tttgcaaaagcat--catttgggttatgataatggtgagtgatgctcttatccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
| || ||| |||||| || | | | || ||| || ||| | || |||| | || | | | | | || || ||| | | | |||| || ||| | || |||||||| || ||||| | || |||||||| |||| ||||||||||| | ||| |||||||| |||||||| ||||| ||||
gtaactcaaaagaagtttgaaattattttctttgtattggattcagacaactagtagttttggaagttcagaaaggtattccattcagtttttaaggaaagcaattgttgttctgtttgatacagGTTATAAATCTTCGCTCAATCCGTCCCCTTGACAGATCGGCAATCAATGCTTCAGTCAGGAAAACTAGCAGACTGGTGACTGTTGAAGAGGGGTTCCCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193715431|gb|FK654572.1|FK654572EST: AGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACT
genomic: AGGCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACT
EST:
gi|151398119|gb|EV267997.1|EV267997EST: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAG GTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACT
genomic: GCTGCTGAGACACTGGCAAAGGAAGGAATCAGTGCTGAGgtaaaacttt ... atccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaaaagcatcatttgggttatgataatggtgagtgatgctcttatccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
ctcttatcc CT-rich tract
ttatgataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaactttagtttgtaatgaacttcccctcttttttgcaaaagcatcatttgggttatgataatggtgagtgatgctcttatccacatagGTCATTAATTTGCGTTCAATCCGACCGCTTGATCGGTCCACAATCAATACTTCTGTCAGGAAAACCAACAGGCTGGTGACAGTTGAAGAAGGGTTTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG