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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctttgcacatatcacttgctttataaattataattaaactatctaattgctgagtgtttttgcttattggaatgatttgtgcatgtatgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG

Basic information

species Glycine max
transcript GLYMA14G02220.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02220.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv19s0090g01210.t01 (Vitis vinifera), 3'ss of exon 11
--------------------------------------------------------ttgctttgcac-atatcacttgctttataaattataattaaactatctaattgctgagtgtttttgcttattggaatgatttgtgcatgtatgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG
                                                         |||||   |   | |   || | ||  | || |  |  |    || ||   | |     | |      | || || ||| |||     | ||| ||| ||||| | || ||||| |||||||||||||| ||||| |||||| | |||||||||||||| || |||||||| ||||| || ||  | |  | ||||
gtcagctttcctttgtaaatatacccactagtctctgctcaatgctcatcagtgggctgcttcatattgtgttgtttccatttaagatgaacaggatctcatttacaagttacccatatacaaacaatg-aaggatatgtttgc-tctgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31466922|gb|CD408950.1|CD408950
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|192301996|gb|FG995166.1|FG995166
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31457278|gb|CD399306.1|CD399306
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31306949|gb|CD392152.1|CD392152
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|12773062|gb|BG237989.1|BG237989
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|209705501|gb|BW673522.1|BW673522
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|31456589|gb|CD398617.1|CD398617
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|7028072|gb|AW457855.1|AW457855
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|10253204|gb|BE820970.1|BE820970
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|151410964|gb|EV280779.1|EV280779
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGGGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|9898910|gb|BE607878.1|BE607878
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTC
EST: gi|22541024|gb|BU090867.1|BU090867
EST:     TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAG                         TTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATT
genomic: TAAAACAGAGTCTGGCAGTTGGTGATATATATAGGCGTGAAAATCTGCAGgtagcatgtt ... tgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaattgctgagtgtttttgcttattggaatgatttgtgcatgtatgttttgtagTTTGCTACTGAGGACCTTGTCAAAGAGGTTGAGAATTCCATTGCTGAATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG
 atctaat  putative branch site (score: 3)
                            aatgattt  TA-rich tract