1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcccttttatattttcttgttttccttttaacatcttgattgggtttatgtgaaaagaatgcaaatgaagttgacgctgcttttgtatttggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAACGGTTGATAATGGAAACTAAACTTTCAAAGGAATACATGAAGAACATAG
species | Glycine max |
transcript | GLYMA13G44940.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAAEST: gi|51342164|gb|CO983425.1|CO983425
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAAEST: gi|13789259|gb|BG651850.1|BG651850
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTTCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTEST: gi|6134416|gb|AW132809.1|AW132809
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCT
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAAEST: gi|214009438|gb|DB988621.1|DB988621
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAAEST: gi|21594248|gb|BQ610100.1|BQ610100
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAAEST: gi|7639905|gb|AW734217.1|AW734217
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAAEST: gi|7795496|gb|AW780893.1|AW780893
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
EST: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAG CAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
genomic: TTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGgtaaattaat ... ggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAA
ttatgtgaaaagaatgcaaatgaagttgacgctgcttttgtatttggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAACGGTTGATAATGGAAACTAAACTTTCAAAGGAATACATGAAGAACATAG
agttgac putative branch site (score: 4)
ttttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccttttatattttcttgttttccttttaacatcttgattgggtttatgtgaaaagaatgcaaatgaagttgacgctgcttttgtatttggttggatagCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAACGGTTGATAATGGAAACTAAACTTTCAAAGGAATACATGAAGAACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaag