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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttaaattcttcaaatttaatctattgatcctagtaatatttactctcagaactcaaatatacaaatcacttatttgtgagtttttctgttaaacagGAGTTGCTTACTCAAGGCACATCGTTCAGATATACTCTTACCATGGCGGGGATGATGTTGGACAGCATCTGGAG

Basic information

species Glycine max
transcript GLYMA13G44420.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44420.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtttttaaattcttcaaatttaatctattgatcctagtaatatttactctcagaactcaaatatacaaatcacttatttgtgagtttttctgttaaac-agGAGTTGCTTACTCAAGGCACATCGTTCAGATATACTCTTACCATGGCGGGGATGATGTTGGACAGCATCTGGAG
||  | |||  |||   | |   |  ||| ||  |  |   | ||  ||  | | ||     || |  |  | |   | || |||   |||   |   |||| ||||||||| ||||| |||||||| || || ||||| ||||| ||||| || ||||||||  | ||||||||||||
gtatgctttagaat--gttaggatgcatcaatataggc--attatgattttttttaggctcaaagtggaggagtatttaatgtgtccttttccttcaaaaaccagGAGTTGCATACTCTAGGCACATTGTGCAAATATATTCTTATCATGGTGGTGATGATGTACGGCAGCATCTGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctcagaactcaaatatacaaatcacttatttgtgagtttttctgttaaacagGAGTTGCTTACTCAAGGCACATCGTTCAGATATACTCTTACCATGGCGGGGATGATGTTGGACAGCATCTGGAG
                                       tttttctgtt  CT-rich tract
             aaatatacaaatcact  TA-rich tract