1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgcgaatactggagggagacacggtcgtggacccaaattacatttcaactcccagttatgatttgggaaaacggagtggttgattttgttttttggccagAAACATAAGCAAAGAAAGCGCCATTACAACAGTGGTCCCCCTTTGGTAAGAGTCACTGGAAGCGTTCAGTGGGAACCTCTGAGTACAAAAGCCTTTTCCT
species | Glycine max |
transcript | GLYMA13G42760.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
caactcccagttatgatttgggaaaacggagtggttgattttgttttttggccagAAACATAAGCAAAGAAAGCGCCATTACAACAGTGGTCCCCCTTTGGTAAGAGTCACTGGAAGCGTTCAGTGGGAACCTCTGAGTACAAAAGCCTTTTCCT
ggttgat putative branch site (score: 5)
ttttgtttttt CT-rich tract
ttgattttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgaatactggagggagacacggtcgtggacccaaattacatttcaactcccagttatgatttgggaaaacggagtggttgattttgttttttggccagAAACATAAGCAAAGAAAGCGCCATTACAACAGTGGTCCCCCTTTGGTAAGAGTCACTGGAAGCGTTCAGTGGGAACCTCTGAGTACAAAAGCCTTTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - -tggaggg
- - - - - - - - - - - ggtcgtg
- - - - - - - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - ctcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagtgg