1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtattttcttccattttatggtattatgataaatggcatattcagccttctgccttaaatatttaggactactttattatggtaactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTA
species | Glycine max |
transcript | GLYMA13G41460.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTEST: gi|19270283|gb|BM886539.1|BM886539
genomic: TCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTEST: gi|51341966|gb|CO983283.1|CO983283
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTEST: gi|192298304|gb|FG992094.1|FG992094
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTEST: gi|16106302|gb|BI894042.1|BI894042
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
EST: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATG GTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
genomic: ATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGgtgagtattt ... taactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCT
atattcagccttctgccttaaatatttaggactactttattatggtaactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTA
tggtaac putative branch site (score: 2)
ctctc CT-rich tract
ttaaatatttagga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattttcttccattttatggtattatgataaatggcatattcagccttctgccttaaatatttaggactactttattatggtaactctcagGTTGTGGTGGCAATTCTTAGCATCATTTCTCTGCTTATTTTGTCATCCGCTGGTGGTTTCATTGGAATTTGGGTTGCTTTGACCATCTATATGGGTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG