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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgttttttctcctttgatctttatttctctctcttcacaaagctcatactcgagtttgtttaatcagtagttatctcttatactgatttgctggcacagATGAAAAATTGTGGAGAAGAGATTGCAGAGGTTGAGGTGAAGCCTGATGGTTGTTGGCGGGTCAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGA

Basic information

species Glycine max
transcript GLYMA13G40320.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40320.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 14
gtagtgttttttctcct-------ttgatctt---tatttctctctc---ttcacaaagctcatac---tcgagtttgtttaatcagtagttatctcttatactgatttgctggcacagATGAAAAATTGTGGAGAAGAGATTGCAGAGGTTGAGGTGAAGCCTGATGGTTGTTGGCGGGTCAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGA
||| |||| ||  |  |        |||  ||   || ||  ||||    || |   | |   ||    | ||   | |||| | | |  || ||| ||    || ||   ||| ||||||| |   ||||||||||||  |  | ||| |  | ||||||||||||||||||||||| || ||| || |||||||| |||     |  |    | || 
gtaatgttcttctttgtggagctactgagtttgactagtttcctctggagttaattgaacaggtaggtattgaagatctttatttatttattttctttttccttgtttctgtgggacagATGCAGTCTTGTGGAGAAGATGTAACTGAGATACAAGTGAAGCCTGATGGTTGTTGGCGTGTAAAGCCTGAGAATGAACGTGGGATTCTAGCACAGTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catactcgagtttgtttaatcagtagttatctcttatactgatttgctggcacagATGAAAAATTGTGGAGAAGAGATTGCAGAGGTTGAGGTGAAGCCTGATGGTTGTTGGCGGGTCAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGA
                                    tactgat  putative branch site (score: 2)
          tttgtttaat  TA-rich tract