1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatattttattttccttgttgcatatgatggctatggtaacatagtctatgaacaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTAGAG
species | Glycine max |
transcript | GLYMA13G39990.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGCGTTGTGTGTGGCACATGATTCAG AACGATCTATTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTAEST: gi|10234562|gb|BE803450.1|BE803450
genomic: TGGCGTTGTGTGTGGCACATGATTCAGgtatatttta ... cttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
EST: CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAG AACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTAEST: gi|18848780|gb|BM567892.1|BM567892
genomic: CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatatttta ... cttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
EST: CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAG AACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
genomic: CACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTGTGGCACATGATTCAGgtatatttta ... cttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTA
atgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTAGAG
tactgat putative branch site (score: 2)
tatcttctt putative PPT
atataatcttagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattttattttccttgttgcatatgatggctatggtaacatagtctatgaacaggtgaatttttctcttacatgctatataatcttagtaattatactgatgaactttccaaatatcttcttgtagAACGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG