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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgaccaaccatataaccacatttactattcatcaatttcaccaaatctttctttttcattaatttctagtcaaattaacaaagtgaataagtttgactaacccaagtttcgaatggtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACAGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAA

Basic information

species Glycine max
transcript GLYMA13G38430.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38430.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 10
gtaagttgaccaaccatataaccacatttactattcatcaatttcaccaaatctttctttttcattaatttctagtcaaattaacaaagtgaataagtttgactaacccaagtttcgaatggtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACAGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAA
                       |  || |   |||   |||||  | |  ||||  | ||   ||| |   |       | ||| ||      | | || || |       ||  |||   | |   |||||||| ||||||||||| ||||||||||||||||| ||||| || ||  | || |||||||  ||||| ||||| ||||||||||| ||| |||| || |
---------------------gtaggttaatatttctataatttt-ctagttcttgttcttattttagtgcttgtgtccttcaaccaa-----catgcttaacca-------ttgtgaacatttc---tagAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAAAGCTGTACTGATTCAACAGCCTCTTTCGTGATTTATGCTCCTGTCGATGTTGTTGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335776|gb|CO979642.1|CO979642
EST:     AATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: AATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgac ... gtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|17402063|gb|BM178845.1|BM178845
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgac ... gtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
EST: gi|6914943|gb|AW396473.1|AW396473
EST:     TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAAT                         AGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG
genomic: TTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgac ... gtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattaacaaagtgaataagtttgactaacccaagtttcgaatggtgcatgtagAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACAGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAA
                        gactaac  putative branch site (score: 1)
               aataagttt  TA-rich tract