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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgacttgttatcaactgatgcttcttcaaaaaaatatcctttttcaattattatggacaatttattctttgcataaactttcttcttctagtttttctttcaattatttttggaaaagaaaatatatgaagCATGACATGTTTATGACCTATGATTTCCTTGATTTGCACACACTTGGGATATTAAGTCACTCTCAACCAAATGGATTAGCAGTACCTGATGCTACAATGC

Basic information

species Glycine max
transcript GLYMA13G33390.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33390.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 15
gtgcgtgacttgttatcaa--ctgatgcttcttcaaaaaaatatcctttttcaattattatggacaatttattctttgcataaact-ttcttcttctagtttttctttcaattatttttggaaaagaaaatatatgaagCATGACATGTTTATGACCTATGATTTCCTTGATTTGCACACACTTGGGATATTAAGTCACTCTCAACCAAATGGATTAGCAGTACCTGATGCTACAATGC
    |||  |||  || ||  |   || ||     ||     |  |  ||   ||| | |    |  |     |  ||  | | || ||| |  |       | ||  || | |  |    ||    | || ||       | |      |  |||  | || |     ||| || |                                                              
----gtgttttggcatgaaatcctttgttttccttaatttgcacacacttgggattttgactacctctcagCCCCATGGGTTAGCTGTTCCTGATGCTACCATGCTCCCAGTCAAATC---AACCTCAGATGTAATGGAATTAATGGACATTGGACAAAAGAATA----GATCTGTAG-------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttcttcttctagtttttctttcaattatttttggaaaagaaaatatatgaagCATGACATGTTTATGACCTATGATTTCCTTGATTTGCACACACTTGGGATATTAAGTCACTCTCAACCAAATGGATTAGCAGTACCTGATGCTACAATGC
               tttttctttcaattat  TA-rich tract