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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatacttattttcaggagatgcataataatattaaatagataaggggaaacaataatgagaaattttgttaaatatttgtagGCTTCAGTATTGGAAATATATAACGAGACCCTCAGGGATTTGTTATCATCAAATCGGTCAAGTGGTATTGACTCAACACGAATAGAAAACGGTGTTCCTG

Basic information

species Glycine max
transcript GLYMA13G32450.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350087|gb|FK316643.1|FK316643
EST:     TCGAGATAAGTCAGTCCCTGAAGGATCAGGGGTGGACGTTCAAAATGCAG                         GCTTCAGTATTGGAAATATATAACGAGACCCTCAGGGATTTGTTATCATCA
genomic: TCGAGATAAGTCAGTCCCTGAAGGATCAGGGGTGGACGTTCAAAATGCAGgttaatatac ... atatttgtagGCTTCAGTATTGGAAATATATAACGAGACCCTCAGGGATTTGTTATCATCA
EST: gi|193686968|gb|FK630001.1|FK630001
EST:     TCGAGATAAGTCAGTCCCTGAAGGATCAGGGGTGGACGTTCAAAATGCAG                         GCTTCAGTATTGGAAATATATAACGAGACCCTCAGGGATTTGTTATCATCA
genomic: TCGAGATAAGTCAGTCCCTGAAGGATCAGGGGTGGACGTTCAAAATGCAGgttaatatac ... atatttgtagGCTTCAGTATTGGAAATATATAACGAGACCCTCAGGGATTTGTTATCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattaaatagataaggggaaacaataatgagaaattttgttaaatatttgtagGCTTCAGTATTGGAAATATATAACGAGACCCTCAGGGATTTGTTATCATCAAATCGGTCAAGTGGTATTGACTCAACACGAATAGAAAACGGTGTTCCTG
                    aaacaataatgagaaa  TA-rich tract