Sequence
atgc intronic sequence ATGC exonic sequence...tttctaatttttttttccttctaacaattaagcttttgggttgtacaaatatactaatttgagattgatatgataacaatgttgatatatgtgtgtgtagACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATG
Basic information
species | Glycine max |
transcript | GLYMA13G29380.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G29380.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv10s0003g02540.t01 (Vitis vinifera), 3'ss of exon 11
-------------------------tttctaatttttttttccttctaaca------attaagcttttgggttgtacaaatatactaatttgag-attgatatgataa-----caatgttgatatatgt-gtgtgtagACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATG
||||| | | |||| || | ||| || || | | |||||| ||||| || ||| | ||| | || ||| || || |||| |||||| | |||||||| ||||| ||||| || || ||||| |||||||| ||||||| || ||||||||||| || || || |||||| | ||||
gtatcaccattcttattttggatattttcttagatattttaccaattcacatgctcaatataggacctaaacctgatcaatatatgtccttgagcatcagtatttcatttgctcaacttcatgatctgttgtttgcagACTGTTGCCCTAGTTGGAGAGAGTGGTAGTGGGAAGTCGACAGTAATCAGCCTAATAGAGAGGTTCTACAACCCTGAATCGGGTCGTATACTACTGGATG
upper sequence: GLYMA13G29380.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv10s0003g02580.t01 (Vitis vinifera), 3'ss of exon 11
tttctaatttttttttccttctaacaattaagcttttgggttg-tacaaatatactaatttgagattgatatgataacaatgttgatatatgtgtgtgtagACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATG
||| | || || | | | | ||| || ||| | | || |||| | || | | || || | ||||| | |||||||| ||||| ||||| || ||||||||||||||||| ||||||| || || || ||||| || || ||| | | ||||
---------------------------gtaatcacttccactgctgcttgtcttttaactttcatttgct----tgac----ttgaaa-atct-tttgcagGCTGTTGCTCTAGTTGGAGAGAGTGGAAGTGGGAAGTCAACAGTGATCAGCCTAATAGAGAGGTTCTATAATCCTGATTCCGGGGCTATATTGTTGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaatatactaatttgagattgatatgataacaatgttgatatatgtgtgtgtagACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATG
atactaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttctaatttttttttccttctaacaattaagcttttgggttgtacaaatatactaatttgagattgatatgataacaatgttgatatatgtgtgtgtagACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATG
- - - - - - - - ccttcta
- - - - - - - - - - - - - - - - - - tgggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtt