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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctactaccatataaccctcttttatcttttttcagtttgtaaaaaagcatatcgtcattaaaagagactaatagctgcctttaatgtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAAGACGTCAGAATGTACAGTCAAGACAAG

Basic information

species Glycine max
transcript GLYMA13G22420.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os02g55410.2 (Oryza sativa), 3'ss of exon 12
------------gtctactacc-atataaccctcttttatcttttttcagtttgtaaaaaagcatatcgtcat---taaaagagactaatagctgcctttaatgtt-----tttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAAGACGTCAGAATGTACAGTCAAGACAAG
             | || ||   |  |   |   ||| || ||||   | | | | || |    || | | ||    ||   |  |   | |   | |||  | ||     |   ||||||||||| |||||||||||  |||||||||| || |||||||| |||||| |||| || ||||| ||||| |||||||||||   ||||||||||
gtcagtcaaagtttttattattgacttgtactattttcatattttgaaaatgtattaacagttctagccttatatgcaaggcaatcagtttgacacattttctattgctactcctcagACTGCACAAGATAACATTGATCTGCAGACAACCATCCTTTCTAGATTTGATCTAATCTTTATTGTTAAAGATGTCAGAATGTATGATCAAGACAAG

upper sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G450055_T01 (Zea mays), 3'ss of exon 12
------------------gtctact-accatataaccctcttttatcttttttcagt--ttgtaaaaaagcatatc-gtcattaaaagagactaatagctgcctttaatgtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAAGACGTCAGAATGTACAGTCAAGACAAG
                   |  ||| | |||| | ||    | ||   | | | |    || ||   |  |||    | || | |    ||| |||   | | |||  ||||    ||||||||||| ||||| |||||  | ||||| || ||||||||||| ||||||  ||| || ||||| |||||  ||||||||||    ||||| |||
gttggtaaacatgtttttattgactcaacatagatccactatataaagtatataaactgttctagccatacatgcaagacaattattttgacaaat--tttcttttgttgttccaacagACTGCACAAGATAATATTGATCTACAGACCACCATTCTTTCTAGATTTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG

upper sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 11
gtctactaccatataaccctcttttatcttttttcagtttgtaaaa---aagcatatcgtcattaaaagagactaatagctgcctttaatgtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAAGACGTCAGAATGTACAGTCAAGACAAG
||| |   ||   |  |   ||   || | || |    || | | |   | || |||  |     ||  || | | ||       |  ||   || ||||||||| || |||||||| |||||||||||||| |||||||| || ||||| || |||||||||||||||||  |||| ||||||||||| || |||
gtccatggccccttttcttcctcagatttgttctttacttcttatattcatgcttatgatttactaagcaggcaactaataaaactacatacatt-ccagACTGCTCAAGATAACATCGACTTGCAGACAACAATTCTTTCAAGATTTGACTTGATTTTCATTGTGAAAGATATCAGGATGTACAGTCAGGATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaagcatatcgtcattaaaagagactaatagctgcctttaatgtttttccagACTGCACAGGATAACATTGACTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATTTTCATTGTGAAAGACGTCAGAATGTACAGTCAAGACAAG
                                            tgtttttcc  CT-rich tract
                                       tttaatgttttt  TA-rich tract