1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttttttgtggatgttttttcgttggggagggttgatctgttctgttggacattaagggagattttcctcccctctaaataataatgccttctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACT
species | Glycine max |
transcript | GLYMA13G21480.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAG GTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCEST: gi|21888649|gb|BQ741862.1|BQ741862
genomic: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGgtaagaatga ... ctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCC
EST: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAG GTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCEST: gi|51335181|gb|CO979047.1|CO979047
genomic: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGgtaagaatga ... ctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCC
EST: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAG GTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCEST: gi|19271170|gb|BM887426.1|BM887426
genomic: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGgtaagaatga ... ctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCC
EST: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAG GTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCEST: gi|51344716|gb|CO985449.1|CO985449
genomic: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGgtaagaatga ... ctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCC
EST: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAG GTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCEST: gi|254346794|gb|GR856516.1|GR856516
genomic: GAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGgtaagaatga ... ctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCC
EST: AGAAATATACAGTGAAG GTTTGTGATTTTGGGCTTTCACGTCTGAA-GACAATACGTTTCTCTCATCC
genomic: AGAAATATACAGTGAAGgtaagaatga ... ctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCC
tggacattaagggagattttcctcccctctaaataataatgccttctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACT
ctctaaa putative branch site (score: 3)
tgccttctttttgt putative PPT
tctaaataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttgtggatgttttttcgttggggagggttgatctgttctgttggacattaagggagattttcctcccctctaaataataatgccttctttttgtagGTTTGTGATTTTGGGCTTTCACGTCTGAAGGCCAATACGTTTCTCTCATCCAAGTCAGCTGCTGGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - gtggatg
- - - - - - - - - - - - gggaggg
- - - - - - - - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcct