1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...aaaacatgcaccaatcaaatgcaagctaacattatttaaggattgtgtgtttgaagttatgtcttttgttcgtttatttttatgcttttaattttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGAACTGCAGAAG
species | Glycine max |
transcript | GLYMA13G18470.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCAAATTTEST: gi|193571522|gb|FK531857.1|FK531857
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTCAAATTT
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCEST: gi|16346177|gb|BI971772.1|BI971772
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTC
EST: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGNNNNNNNGACCATCEST: gi|208022836|gb|GD821350.1|GD821350
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATC
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCAAATTTGAGCCEST: gi|208166870|gb|GD961288.1|GD961288
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGAGCC
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCAAATTEST: gi|208260587|gb|GE059385.1|GE059385
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTCAAATT
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCAA-TTTGAGEST: gi|207710757|gb|GD691735.1|GD691735
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGAG
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAGTATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTEST: gi|208187414|gb|GD982224.1|GD982224
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTT
EST: GAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAG CGAAGCATTGAAGATAAACTTTCAAATTTGA
genomic: GAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGgtacaatcaa ... attttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGA
tgtgtttgaagttatgtcttttgttcgtttatttttatgcttttaattttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGAACTGCAGAAG
ttttaat putative branch site (score: 3)
ttttgcc CT-rich tract
ttcgtttatttttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacatgcaccaatcaaatgcaagctaacattatttaaggattgtgtgtttgaagttatgtcttttgttcgtttatttttatgcttttaattttgccagCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGAACTGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - catgcac
- - - - - - - - - -tgcaagc
- - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttatgc