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gttcagcttcacttctcatgttctaatctttactaatgattagtcaatcttatatattaatattaagatactgtaatatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCATAGACATGGATGCTGATGTGATCACCATTGAGAACTCTAGATCAGACG
species | Glycine max |
transcript | GLYMA13G15140.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCACTCATTAAGGATCACCAACTGTGGTGTGGAGGACATTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|57574542|gb|CX547517.1|CX547517
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|16343668|gb|BI969263.1|BI969263
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|58019711|gb|CX706453.1|CX706453
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|22928906|gb|BU546045.1|BU546045
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCNNNTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGGTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|58025149|gb|CX711890.1|CX711890
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CT-TTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|21257124|gb|BQ454012.1|BQ454012
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|209726049|gb|BW672775.1|BW672775
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|7691802|gb|AW759923.1|AW759923
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|193415380|gb|FK380200.1|FK380200
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCEST: gi|209720064|gb|BW651120.1|BW651120
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
EST: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAG ATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
genomic: CTGTTCACTCATTTAGGATTACCAACTGTGGTGTGGAGGACACTACTCAGgttcagcttc ... tatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATC
actaatgattagtcaatcttatatattaatattaagatactgtaatatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCATAGACATGGATGCTGATGTGATCACCATTGAGAACTCTAGATCAGACG
tcaatcttatatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagcttcacttctcatgttctaatctttactaatgattagtcaatcttatatattaatattaagatactgtaatatttgacagATTCACACTCACATGTGCTACTCCAACTTCAATGACATCATTCACTCAATCATAGACATGGATGCTGATGTGATCACCATTGAGAACTCTAGATCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA