1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acttgagtttgatcactgaggaaattgctatgtgcatacaacagttttaatgtaactgcctaactggttattaatttcttattctgtacttgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG
species | Glycine max |
transcript | GLYMA13G10700.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAA GACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAEST: gi|9899544|gb|BE608512.1|BE608512
genomic: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAAgtaagttctt ... tgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAA
EST: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAA GACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAEST: gi|208148402|gb|GD950760.1|GD950760
genomic: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAAgtaagttctt ... tgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAA
EST: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAA GACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAEST: gi|298184589|gb|HO029802.1|HO029802
genomic: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAAgtaagttctt ... tgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAA
EST: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAA GACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAATATATCTGAA
genomic: TCTGAAAAATTGAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAACAAAgtaagttctt ... tgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAA
tttaatgtaactgcctaactggttattaatttcttattctgtacttgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG
tattaat putative branch site (score: 2)
cttgtttt putative PPT
ttattaatttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgagtttgatcactgaggaaattgctatgtgcatacaacagttttaatgtaactgcctaactggttattaatttcttattctgtacttgttttgaagGACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATCTGAAGGTGCTTGATCTGCAAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - gagtttg
- - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actggtt