Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggcacttcagttcaaataacacaatcctagacttcttcgtatttgaacatcacttcatttcatattgttaatgttttattttttctattggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAGAAGCTAATGCTTTGGAAGCACCAGAAATGCTTGATGGTGAAGCTTGTC

Basic information

species Glycine max
transcript GLYMA13G09620.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025403|gb|CX712144.1|CX712144
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|193414737|gb|FK381391.1|FK381391
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|193397057|gb|FK362013.1|FK362013
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|209722126|gb|BW672375.1|BW672375
EST:     CAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|57575171|gb|CX548146.1|CX548146
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|58021051|gb|CX707793.1|CX707793
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|58015154|gb|CX701896.1|CX701896
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|151397175|gb|EV267048.1|EV267048
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTT                         ATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
EST: gi|22927621|gb|BU544760.1|BU544760
EST:     CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTNNAATGAGNNNT                         ATCTNNAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA
genomic: CTACACTTTGTATCAGACGTGCTCCAAGGGCTAGGCCTCTAATGAGCCTTgtaagttatc ... tggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaacatcacttcatttcatattgttaatgttttattttttctattggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAGAAGCTAATGCTTTGGAAGCACCAGAAATGCTTGATGGTGAAGCTTGTC
                      tgttaat  putative branch site (score: 3)
                              ttttattttttctatt  CT-rich tract
          ttcatttcatattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggcacttcagttcaaataacacaatcctagacttcttcgtatttgaacatcacttcatttcatattgttaatgttttattttttctattggactacagATCTCTAAGCTCCTTGGAGGTGATCCTGATGTGATCAAGTGGGCAAGACTAGAAGCTAATGCTTTGGAAGCACCAGAAATGCTTGATGGTGAAGCTTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - cacttca
- - - - - - - - - - - - - - - - -cttcttc