Sequence
atgc intronic sequence ATGC exonic sequencegtgatatagagcatttccttctttttttcacacatgattgcaatgtttataaattttaaggatgattcgttcataaaatttaacagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAATAAGTCATCATCAGAAGGAACACCAACACGAGTGGAAAATGGTACTC
Basic information
species | Glycine max |
transcript | GLYMA12G34330.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os04g53760.1 (Oryza sativa), 3'ss of exon 11
-gtgatatagagcatttccttctttttttcacacatgattgcaatgtttataaattttaaggatgattcgttcataaaatttaacagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAATAAGTCATCATCAGAAGGAACACCAACACGAGTGGAAAATGGTACTC--
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gttagtatccatagtgcaatgcagattctgaagtgtacattctatgt-----agtgttgctgagagttt-ttccta----tgtgcagGCATCAATGTTGGAAATATACAATGAGACAATTCGTGATTTGTTAGCACCTGGTCGGTC--TAATAACTTTGATCTGTCTACCAGTAAACAATACACCATAA
upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G114861_T01 (Zea mays), 3'ss of exon 11
----gtgatatagagc-atttccttctttttttcacacatgattgcaatgtttataaattttaaggatgattcgttcataaaatttaacagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAATAAGTCATCATCAGAAGGAACACCAACACG-AGTGGAAAATGGTACTC-
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gttagtatctcaaagctatttagcttcttaactgttgttttattttatgttattgctaatttggtaaagacatatttggttcgttgtgcagGCATCAATGTTGGAAATATACAATGAGACCATTCGTGATTTGTTAGCACCTGGTCGGTC--TAACAGTTTTGAGTCTAGTAAACAATGCACTATAAAGCATG
upper sequence: GLYMA12G34330.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv19s0014g05070.t01 (Vitis vinifera), 3'ss of exon 11
-----------gtgatatagagcatttccttctttttttcacaca-----tgattgcaatgtttataa--attttaaggatgattcgt-tcataaaattta---acagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAATAAGTCATCATCAGAAGGAACACCAACACGAGTGGAAAATGGTACTC
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gtgagcaagcaatattatcttgcctttttgttcattttctgcttaccctttgaatgttatgtctatggtcattgtgaacacatgtcttattctaagatatatttgtagGTTTCAATGTTGGAAATATATAATGAAACAATTCGTGATTTGTTATCAACAAATCGATCCTGCTCTGATGTCTCACGAACAGAAAATGGTGTTGCTGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193391247|gb|FK356986.1|FK356986EST: GAAATATGAAATGCAG GTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACA
genomic: GAAATATGAAATGCAGgtgatataga ... aatttaacagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatgattgcaatgtttataaattttaaggatgattcgttcataaaatttaacagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAATAAGTCATCATCAGAAGGAACACCAACACGAGTGGAAAATGGTACTC
attgcaatgtttataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatatagagcatttccttctttttttcacacatgattgcaatgtttataaattttaaggatgattcgttcataaaatttaacagGTGTCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAATAAGTCATCATCAGAAGGAACACCAACACGAGTGGAAAATGGTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA