1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtatctctaattggtttctcctattagatctgacataacacaaaacggaaattgcactgttgaatgtttgtttttacacatttgtgtggtctgaatatcagttaatcataacagcattgtgctgctgaaaggattatgtactttttattttctcatgatatccatataattttgtaatgaaaacatttgattgcagTTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTCAGGCGGCAAACCCAAATGTAAAGAGATAGTAAAACATAGAGTGAACTGT
species | Glycine max |
transcript | GLYMA12G33950.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAA TTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTCEST: gi|31309866|gb|CD395069.1|CD395069
genomic: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAAgtatgtatct ... ttgattgcagTTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTC
EST: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAA TTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTCEST: gi|11687934|gb|BF595610.1|BF595610
genomic: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAAgtatgtatct ... ttgattgcagTTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTC
EST: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTNTAAACAGGAA TTAGATGGAGNCGCCCC-TGAACCTG-TTCCTAAGCTCATCCCAGAGCATGEST: gi|31470238|gb|CD412206.1|CD412206
genomic: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAAgtatgtatct ... ttgattgcagTTAGATGGAG-CGCCCCCTGAAC-TGCTTCCTAAGCTCATCCCAGAGCATG
EST: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAA TTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTC
genomic: GGCTACCTAATGGTCGTCCACTGCCTCCACTTTTCAACTTTAAACAGGAAgtatgtatct ... ttgattgcagTTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTC
tttttattttctcatgatatccatataattttgtaatgaaaacatttgattgcagTTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTCAGGCGGCAAACCCAAATGTAAAGAGATAGTAAAACATAGAGTGAACTGT
atttgat putative branch site (score: 5)
atataattttgtaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatctctaattggtttctcctattagatctgacataacacaaaacggaaattgcactgttgaatgtttgtttttacacatttgtgtggtctgaatatcagttaatcataacagcattgtgctgctgaaaggattatgtactttttattttctcatgatatccatataattttgtaatgaaaacatttgattgcagTTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCATGTCAGGCGGCAAACCCAAATGTAAAGAGATAGTAAAACATAGAGTGAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA