1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtgaatatttaacaacagtacatttttttaaatcaattttgctattccaaatatgcgtatgtatgctttatcattgggtgattgaactatatataattggttaattgtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTG
species | Glycine max |
transcript | GLYMA12G29550.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GATTTCCCACTCTCCTCCTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|120534021|gb|EH262154.1|EH262154
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|58017030|gb|CX703772.1|CX703772
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|10844549|gb|BF067876.1|BF067876
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|58024880|gb|CX711621.1|CX711621
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|207773559|gb|GD744571.1|GD744571
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAGGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|254323994|gb|GR836226.1|GR836226
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|19268670|gb|BM884926.1|BM884926
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: CCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|208211647|gb|GE009922.1|GE009922
genomic: CCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: AGGAAACAAGAGTTTTGTACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAEST: gi|213613712|gb|DB980522.1|DB980522
genomic: AGGAAACAAGAGTTTTG-ACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAA
EST: CGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTAAAACAAGTTCCTCAAGEST: gi|37995855|gb|CF807444.1|CF807444
genomic: CGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGEST: gi|57575124|gb|CX548099.1|CX548099
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
EST: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCT ATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
genomic: GATTTCCCACTCTCCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTgtacgtgaat ... gtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAG
tatgctttatcattgggtgattgaactatatataattggttaattgtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTG
ggttaat putative branch site (score: 4)
aactatatataattgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgaatatttaacaacagtacatttttttaaatcaattttgctattccaaatatgcgtatgtatgctttatcattgggtgattgaactatatataattggttaattgtgtctgcagATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT