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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatacaatgtcatatttcaggtacaaaatgataacactttatttgtagtcgggtgatgctgcatgattgtgttctttgttcttattttctcttctgttcatgcagAATGCCTTTGAAATGGCAACATTTATTTGGACATTG

Basic information

species Glycine max
transcript GLYMA12G29080.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29080.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G11000.1 (Arabidopsis thaliana), 3'ss of exon 11
gtgatacaatgtcatatttcaggtacaaaatgataacacttt--atttgtagtcgggtgatgctgcatgattgtgttctttgttcttattttctcttctgttcatgcagAATGCCTTTGAAATGGCAACATTTATTTGGACATTG
                  | ||  | || |   |  |  | |  |||  |       ||||  | |   |||        || || |  | | | | ||| | ||||||||||| ||||||||||||||||| || |||   |||
-----------------gtaagcaaaaagacttttcctttctcaattcttcaagccatgatattactctattcacacagatgatccttatatatttcctgctaatgcagAATGCATTTGAAATGGCAACATTCATCTGGTTCTTG

upper sequence: GLYMA12G29080.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 11
gtgatacaatgtcatatttcaggtacaaaatgataacactttatttgtagtcg-ggtgatgctgcatgattgtgttctttgttcttattttctcttctgttcatgcagAATGCCTTTGAAATGGCAACATTTATTTGGACATTG
          || ||  |   | ||   |    |     ||||| | |   |  ||| ||    |    |||  || |     || ||| | | |  |||  ||||||||||||||||| ||||||||||| || ||| | | |
----------gtgatgatgatgatattcacaacttgtgttttatatatgaccttggttatttctctatcttggattata-accctcattgtgtttcttgtgtatgcagAATGCCTTTGAGATGGCAACATTCATCTGGTCTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtgatgctgcatgattgtgttctttgttcttattttctcttctgttcatgcagAATGCCTTTGAAATGGCAACATTTATTTGGACATTG
                   tgttctttgttcttat  CT-rich tract
                        tttgttcttatttt  TA-rich tract