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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcaattgcgtatatattggcttttataataatgacctaccttggatgataaatagttggatatagttattctgtaccaaagggatgcattctcaagttatgatttcacattgagatgatgttaatatttgttgtgctgaattgcagATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG

Basic information

species Glycine max
transcript GLYMA12G11820.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G11820.2 (Glycine max), 3'ss of exon 11
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagtttcaattgcgtatatattggcttttataataatgacctaccttggatgataaatagttggatatagttattctgtaccaaagggatgcattctcaagttatgatttcacattgagatgatgttaatatttgttgtgctgaattgcagATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG
                                                                   ||   | |     ||   |  | ||   ||    |||| ||     || ||||| | | | |||  |||| || | ||  | ||||||||| ||||||||||| ||||| || || ||||| |||||| |  | |||||||||||||| |||
------------------------------------------------------------------gtaagttgaaagcttaggtagcgaataacttaaacagttgtgg----actttgag-taaggctaacttttggtgaggtgg-tggcagATATTTTACTTCATTGGGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231650|gb|BE800538.1|BE800538
EST:     AGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCNNNNNNNGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGC
EST: gi|22929729|gb|BU546868.1|BU546868
EST:     AGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGG                         ATATTCTACTTCATTGGATTTGGCNNNNNNNGTCTCGAGTCAGTGCTGAGC
genomic: AGGCATTTTGGCTGCGATTGACGTGTTGGGCGACAATGCATTGGTTGGGgtaagtttca ... tgaattgcagATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagttatgatttcacattgagatgatgttaatatttgttgtgctgaattgcagATATTCTACTTCATTGGATTTGGCTTTTTTTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG
                           tgttaat  putative branch site (score: 3)
                       atgatgttaatattt  TA-rich tract