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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggattttaccttggtttatgttagtcttagaaaagtatcctgtgctctctattttctgtctggctaacctactttggcctgtgctgtatttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTG

Basic information

species Glycine max
transcript GLYMA12G09250.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09250.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g00480.t01 (Vitis vinifera), 3'ss of exon 11
caggattttaccttggtttatgt--tag--tcttagaaaagtatcctgtgctctctattttctgtctggctaacc-tactttggcctgtgctgtatttc--tggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTG
        || |||| | |||||  |||  ||| |  |       || |||| |||  ||| |  | |  |     || ||   | || | | |  |    ||| |||| ||||| ||||| |||| |||||| |  |||||||||||||| ||||| |||||||| || ||| | || ||||| ||||||||||| ||||||||||
-------atatcttgatctatgtactagcatctcatgatctggaactttgctttcttgtttttaacagtttttttgtatttaaacttgaggttttgtgtgatggcagGTAGGAGATATGGCAGAACTGGGGATTTCTGAAGCATTCAAAGTTAAGCAGGCTGTATTACTCTCTGCCACTGAGGCTGCTGAGATGATTCTTAGAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256060|gb|BQ452948.1|BQ452948
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|193710151|gb|FK642849.1|FK642849
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|58016744|gb|CX703486.1|CX703486
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|254341171|gb|GR854899.1|GR854899
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|254341476|gb|GR850689.1|GR850689
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|7587915|gb|AW703721.1|AW703721
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208260530|gb|GE058110.1|GE058110
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208145767|gb|GD943140.1|GD943140
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|192294950|gb|FG986669.1|FG986669
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAGGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|17401800|gb|BM178582.1|BM178582
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGCCTGAACGGCGGATATGCGAACCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208137523|gb|GD938033.1|GD938033
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|58017055|gb|CX703797.1|CX703797
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|15286013|gb|BI469904.1|BI469904
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|254341170|gb|GR854898.1|GR854898
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|10252492|gb|BE820258.1|BE820258
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|207780145|gb|GD753074.1|GD753074
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|193500848|gb|FK464967.1|FK464967
EST:     TCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: TCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208317468|gb|GE116207.1|GE116207
EST:     AAGGAGGGCTGCTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AAGGAGGGCTG-TACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208319819|gb|GE114610.1|GE114610
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|21256777|gb|BQ453665.1|BQ453665
EST:     AGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208043568|gb|GD843114.1|GD843114
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|17153405|gb|BM143338.1|BM143338
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|254341477|gb|GR850690.1|GR850690
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208080940|gb|GD876708.1|GD876708
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208136261|gb|GD940550.1|GD940550
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|7590730|gb|AW706539.1|AW706539
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|7591547|gb|AW707278.1|AW707278
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|16104842|gb|BI892582.1|BI892582
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208080904|gb|GD876686.1|GD876686
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|151395521|gb|EV265398.1|EV265398
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208037701|gb|GD832299.1|GD832299
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGG
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGG
EST: gi|193563923|gb|FK520440.1|FK520440
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208171763|gb|GD971992.1|GD971992
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCA
EST: gi|193534680|gb|FK491182.1|FK491182
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGCCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|193357675|gb|FK320213.1|FK320213
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGGAGTATGCGAAGCATTCAAAGTCAAGC
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAAC-GGGGGA-TATGCGAAGCATTCAAAGTCAAGC
EST: gi|16105470|gb|BI893210.1|BI893210
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|6912900|gb|AW394430.1|AW394430
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGATGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|16343768|gb|BI969363.1|BI969363
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
EST: gi|208124013|gb|GD921933.1|GD921933
EST:     AGCATCAGAAGGAGGGCTGCACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCACTCAAAGTCAAG
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAG
EST: gi|31308241|gb|CD393444.1|CD393444
EST:     AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCT                         GTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA
genomic: AGCATCAGAAGGAGGGCTGTACTGCTGGAATTGATGTTATTTCTGGCTCTgtaagtattg ... tttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctctattttctgtctggctaacctactttggcctgtgctgtatttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTG
                  ggctaac  putative branch site (score: 2)
                                           tatttct  putative PPT
      tattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caggattttaccttggtttatgttagtcttagaaaagtatcctgtgctctctattttctgtctggctaacctactttggcctgtgctgtatttctggaagGTTGGAGACATGGCTGAACGGGGGATATGCGAAGCATTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAGCTGAGATGATCCTTAGAGTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - taccttg
- - - - - - - - - - - - - - - -gaaaagta
- - - - - - - - - - - - - - - - - - - -tcctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgta