1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctgatttctgcacagctgttgtgttaatatctatttctggtgtctcagatttttgtattcacctaatctaatgatcttactttttgttatggttgacagCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAGGCTGCCACCACCTGGGTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTT
species | Glycine max |
transcript | GLYMA12G07790.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGATAATTTGGTCAGTGGTCATCCCATTGCATCTTCTAATAAGTTTTCTG CCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAEST: gi|254325828|gb|GR838709.1|GR838709
genomic: TGATAATTTGGTCAGTGGTCATCCCATTGCATCTTCTAATAAGTTTTCTGgtgagtaaca ... tggttgacagCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCA
EST: TGATAATTTGGTCAGTGGTCATCCCATTGCATCTTCTAATAAGTTTTCTG CCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCA
genomic: TGATAATTTGGTCAGTGGTCATCCCATTGCATCTTCTAATAAGTTTTCTGgtgagtaaca ... tggttgacagCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCA
tcagatttttgtattcacctaatctaatgatcttactttttgttatggttgacagCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAGGCTGCCACCACCTGGGTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTT
atcttac putative branch site (score: 3)
ttactttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgatttctgcacagctgttgtgttaatatctatttctggtgtctcagatttttgtattcacctaatctaatgatcttactttttgttatggttgacagCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAGGCTGCCACCACCTGGGTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - -tgcacag
- - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - tggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacctaa