Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttgttgtcatatacagttatgaattgtacaactatttaaaattgtgagacactagttcatttactatttgtatttgttttattcactttcttatttgtatttctcctttgtcagATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTA
Basic information
species | Glycine max |
transcript | GLYMA12G07590.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07590.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv06s0004g03180.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtttgttgtcatatacagttatgaattgtacaactatttaaaattgtgagacactagttca-tttactatttgtatttgttttattcactttcttatttgtatttctcct----ttgtcagATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTA
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----------------cgatacttgtg--ttttaca--tattctactctc-----ctctcttttactttactataggtgatgaacatgcttacatttttaattggttttggtttggtgtaatcagATCACACCATGTACCAAAGATGGAATTAATAAGATTTCCTTAACGGGATGCGATGCTCGTATTTTCTGTTTAGGGGTTAGAATTGTAAAGCGGCGAACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23729846|gb|BU763027.1|BU763027EST: GACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGACGGTCCAATT ATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGT
genomic: GACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGGGATGACGGTCCAATTgtaagtttgt ... cctttgtcagATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttactatttgtatttgttttattcactttcttatttgtatttctcctttgtcagATCACGCCATATACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTTTAGGGGTTCGTATTGTTAAAAGGCGCAGTA
ttcactttcttatttg CT-rich tract
tatttgtatttgtttt TA-rich tract