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...gatgtaatgagggattctgtgtttttaccttgtggattaataatgaaacttttggtgaaaaactttgaagttagctaatgctttatgtatggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGGGAT
species | Glycine max |
transcript | GLYMA12G06980.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGATTGAACTTGCTGAGAATGTGAAAGAG CTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATEST: gi|193521072|gb|FK478125.1|FK478125
genomic: ATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
EST: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG CTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATEST: gi|193616842|gb|FK571596.1|FK571596
genomic: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
EST: GAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG CTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATEST: gi|214004740|gb|DB985629.1|DB985629
genomic: GAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
EST: ATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG CTTAATAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATEST: gi|208182321|gb|GD980334.1|GD980334
genomic: ATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
EST: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG CTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATEST: gi|208205622|gb|GE006621.1|GE006621
genomic: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
EST: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG CTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATEST: gi|209703510|gb|BW656548.1|BW656548
genomic: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
EST: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG CTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
genomic: GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAGgttagttgta ... ggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGAT
aaacttttggtgaaaaactttgaagttagctaatgctttatgtatggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGGGAT
agctaat putative branch site (score: 3)
aaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtaatgagggattctgtgtttttaccttgtggattaataatgaaacttttggtgaaaaactttgaagttagctaatgctttatgtatggttttgcagCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA