Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttactcacctcggttaattaattattttctctaaatttctcctagactttttgtttttttagggtgatatttcgactaatttaaatctcctaattactctttgcagCCCCGCATATTTGTACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106401|gb|BI894141.1|BI894141
EST:     GTTTGGTGCTGCTGTTGATGCACTAAAG                         CCCCGCATATTTGTACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG
genomic: GTTTGGTGCTGCTGTTGATGCACTAAAGgtgttactca ... ctctttgcagCCCCGCATATTTGTACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttttagggtgatatttcgactaatttaaatctcctaattactctttgcagCCCCGCATATTTGTACTGCTAAGGCGGTGTCTTTTTGATAGTGATGATGAG
                                    tcctaat  putative branch site (score: 2)
 ttactcttt  CT-rich tract
 actaatttaaatct  TA-rich tract